HL_5O60_009

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGUGAUACCGGGUAGGGGUUG

Length

21 nucleotides

Bulged bases

5O60|1|A|U|285, 5O60|1|A|C|291, 5O60|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|A|U|283
5O60|1|A|G|284
5O60|1|A|U|285
5O60|1|A|G|286
5O60|1|A|A|287
5O60|1|A|U|288
5O60|1|A|A|289
5O60|1|A|C|290
5O60|1|A|C|291
5O60|1|A|G|292
5O60|1|A|G|293
5O60|1|A|G|294
5O60|1|A|U|295
5O60|1|A|A|296
5O60|1|A|G|297
5O60|1|A|G|298
5O60|1|A|G|299
5O60|1|A|G|300
5O60|1|A|U|301
5O60|1|A|U|302
5O60|1|A|G|303

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9