5O60 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5O60_001 | 1/A/56:65 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_5O60_002 | 1/A/84:93 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_5O60_003 | 1/A/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_5O60_004 | 1/A/134:141 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
| HL_5O60_005 | 1/A/157:167 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_5O60_006 | 1/A/193:200 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_5O60_007 | 1/A/224:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_5O60_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_5O60_009 | 1/A/283:303 | No text annotation | ||
| HL_5O60_076 | 1/A/337:344 | Pseudoknot geometry | geometric HL_4FRN_006 HL_93324.4 | |
| HL_5O60_011 | 1/A/387:394 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_5O60_012 | 1/A/401:405 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5O60_013 | 1/A/409:417 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_5O60_077 | 1/A/470:480 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_5O60_015 | 1/A/498:505 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_5O60_016 | 1/A/550:555 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_5O60_017 | 1/A/575:580 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5O60_018 | 1/A/634:637 | No text annotation | ||
| HL_5O60_019 | 1/A/658:667 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5O60_020 | 1/A/705:710 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_5O60_021 | 1/A/723:728 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5O60_022 | 1/A/735:741 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5O60_023 | 1/A/755:760 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_5O60_024 | 1/A/827:834 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5O60_025 | 1/A/859:868 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_5O60_026 | 1/A/894:900 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_5O60_027 | 1/A/941:946 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5O60_028 | 1/A/1001:1006 | No text annotation | ||
| HL_5O60_029 | 1/A/1072:1079 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5O60_030 | 1/A/1096:1103 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_5O60_031 | 1/A/1182:1192 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_5O60_032 | 1/A/1210:1217 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_5O60_033 | 1/A/1290:1293 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_5O60_034 | 1/A/1336:1341 | GNRA | homologous HL_4WF9_031 HL_37824.8 | |
| HL_5O60_035 | 1/A/1396:1404 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.9 | |
| HL_5O60_036 | 1/A/1439:1445 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_5O60_037 | 1/A/1478:1483 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_5O60_038 | 1/A/1504:1513 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5O60_039 | 1/A/1582:1589 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_5O60_040 | 1/A/1671:1682 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_5O60_041 | 1/A/1712:1718 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_5O60_042 | 1/A/1753:1760 | No text annotation | ||
| HL_5O60_043 | 1/A/1785:1788 | No text annotation | geometric HL_7RQB_039 NA | |
| HL_5O60_044 | 1/A/1830:1837 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5O60_045 | 1/A/1848:1854 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_5O60_046 | 1/A/1909:1914 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_5O60_047 | 1/A/1945:1948 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
| HL_5O60_048 | 1/A/1969:1973 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5O60_049 | 1/A/1994:2004 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_5O60_050 | 1/A/2023:2028 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5O60_051 | 1/A/2089:2093 | No text annotation | homologous HL_4WF9_045 NA | |
| HL_5O60_052 | 1/A/2134:2144 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5O60_053 | 1/A/2173:2181 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5O60_054 | 1/A/2251:2260 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5O60_055 | 1/A/2366:2371 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_5O60_056 | 1/A/2432:2439 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_5O60_057 | 1/A/2472:2480 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5O60_058 | 1/A/2488:2500 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_5O60_078 | 1/A/2528:2536 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_5O60_060 | 1/A/2548:2555 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
| HL_5O60_061 | 1/A/2579:2586 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_5O60_062 | 1/A/2598:2603 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5O60_063 | 1/A/2628:2637 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_5O60_064 | 1/A/2695:2703 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_5O60_065 | 1/A/2752:2759 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_5O60_066 | 1/A/2775:2781 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_5O60_067 | 1/A/2818:2823 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_5O60_068 | 1/A/2882:2887 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_5O60_069 | 1/A/2925:2930 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_5O60_070 | 1/A/2969:2983 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5O60_071 | 1/A/3019:3023 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_5O60_072 | 1/A/3040:3048 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_5O60_073 | 1/A/3077:3082 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_5O60_079 | 1/B/35:49 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_5O60_074 | 1/B/39:45 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5O60_075 | 1/B/85:90 | No text annotation | geometric HL_5U3G_001 HL_75660.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5O60_010 | No text annotation | ||
| HL_5O60_014 | No text annotation | ||
| HL_5O60_059 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5O60_001 | 1/A/21:27, 1/A/597:603 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_5O60_002 | 1/A/33:34, 1/A/530:532 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5O60_003 | 1/A/40:41, 1/A/522:524 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_5O60_004 | 1/A/78:82, 1/A/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5O60_005 | 1/A/182:183, 1/A/211:213 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_5O60_006 | 1/A/187:193, 1/A/200:207 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_5O60_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5O60_008 | 1/A/322:325, 1/A/450:454 | No text annotation | ||
| IL_5O60_009 | 1/A/356:364, 1/A/438:439 | No text annotation | ||
| IL_5O60_010 | 1/A/369:371, 1/A/432:433 | Single bulged U | geometric IL_4V9F_107 IL_89505.4 | |
| IL_5O60_011 | 1/A/374:376, 1/A/425:429 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5O60_012 | 1/A/382:384, 1/A/397:398 | Single bulged U | geometric IL_3TZR_002 IL_89505.4 | |
| IL_5O60_013 | 1/A/569:572, 1/A/583:596 | No text annotation | homologous IL_4WF9_015 IL_81516.2 | |
| IL_5O60_014 | 1/A/623:626, 1/A/646:649 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_5O60_015 | 1/A/630:631, 1/A/640:642 | No text annotation | ||
| IL_5O60_016 | 1/A/656:658, 1/A/667:669 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_5O60_017 | 1/A/683:685, 1/A/780:781 | Single bulged A | homologous IL_7A0S_012 IL_31462.7 | |
| IL_5O60_018 | 1/A/699:703, 1/A/712:716 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5O60_019 | 1/A/787:789, 1/A/921:923 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_5O60_020 | 1/A/789:793, 1/A/914:921 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5O60_021 | 1/A/812:813, 1/A/878:880 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
| IL_5O60_022 | 1/A/817:818, 1/A/843:845 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_5O60_023 | 1/A/818:822, 1/A/839:843 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5O60_024 | 1/A/853:855, 1/A/872:873 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_5O60_025 | 1/A/890:892, 1/A/902:906 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_5O60_026 | 1/A/952:953, 1/A/1057:1059 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_5O60_027 | 1/A/959:962, 1/A/1050:1051 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_50694.7 | |
| IL_5O60_131 | 1/A/959:961, 1/A/1048:1051 | Other IL | homologous IL_9DFE_023 IL_44465.1 | |
| IL_5O60_126 | 1/A/959:964, 1/A/1043:1051 | No text annotation | ||
| IL_5O60_132 | 1/A/961:964, 1/A/1043:1048 | No text annotation | ||
| IL_5O60_028 | 1/A/962:964, 1/A/1043:1050 | No text annotation | ||
| IL_5O60_029 | 1/A/971:977, 1/A/1030:1036 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_5O60_030 | 1/A/977:978, 1/A/1028:1030 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_5O60_031 | 1/A/979:984, 1/A/1024:1027 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_5O60_032 | 1/A/986:988, 1/A/1020:1022 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_5O60_033 | 1/A/991:996, 1/A/1012:1017 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_5O60_133 | 1/A/996:997, 1/A/1010:1012 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_5O60_035 | 1/A/1066:1067, 1/A/1084:1086 | Single bulged G | geometric IL_4LVW_002 IL_00225.14 | |
| IL_5O60_036 | 1/A/1112:1114, 1/A/1278:1279 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5O60_037 | 1/A/1116:1120, 1/A/1272:1276 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_5O60_038 | 1/A/1122:1129, 1/A/1269:1270 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_5O60_039 | 1/A/1129:1131, 1/A/1268:1269 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_5O60_040 | 1/A/1136:1142, 1/A/1258:1263 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_5O60_041 | 1/A/1142:1148, 1/A/1242:1258 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_5O60_042 | 1/A/1149:1152, 1/A/1239:1241 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_57744.1 | |
| IL_5O60_043 | 1/A/1161:1169, 1/A/1226:1230 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_5O60_044 | 1/A/1177:1180, 1/A/1194:1197 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_5O60_045 | 1/A/1205:1209, 1/A/1218:1220 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_5O60_046 | 1/A/1311:1313, 1/A/1362:1365 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_5O60_047 | 1/A/1322:1329, 1/A/1349:1353 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5O60_048 | 1/A/1333:1334, 1/A/1343:1345 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_5O60_049 | 1/A/1377:1384, 1/A/2235:2241 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_5O60_050 | 1/A/1425:1428, 1/A/1821:1822 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_50694.7 | |
| IL_5O60_051 | 1/A/1434:1438, 1/A/1446:1448 | C-loop | homologous IL_7A0S_047 IL_83150.2 | |
| IL_5O60_052 | 1/A/1466:1470, 1/A/1491:1495 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_5O60_053 | 1/A/1472:1476, 1/A/1485:1489 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_5O60_054 | 1/A/1529:1531, 1/A/1804:1806 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 IL_87907.2 | |
| IL_5O60_128 | 1/A/1540:1543, 1/A/1627:1632 | No text annotation | ||
| IL_5O60_056 | 1/A/1550:1557, 1/A/1614:1620 | No text annotation | ||
| IL_5O60_057 | 1/A/1560:1562, 1/A/1609:1611 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_5O60_058 | 1/A/1562:1567, 1/A/1604:1609 | No text annotation | ||
| IL_5O60_059 | 1/A/1571:1572, 1/A/1598:1600 | No text annotation | ||
| IL_5O60_060 | 1/A/1573:1576, 1/A/1595:1597 | No text annotation | ||
| IL_5O60_061 | 1/A/1638:1642, 1/A/1797:1800 | Other IL | homologous IL_4WF9_054 IL_99646.2 | |
| IL_5O60_062 | 1/A/1653:1656, 1/A/1777:1781 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_5O60_063 | 1/A/1658:1661, 1/A/1771:1775 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5O60_064 | 1/A/1689:1692, 1/A/1742:1746 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_5O60_065 | 1/A/1694:1699, 1/A/1735:1740 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_5O60_066 | 1/A/1702:1703, 1/A/1726:1732 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5O60_067 | 1/A/1709:1711, 1/A/1719:1720 | Stack outside cWW | geometric IL_6JQ6_004 IL_66635.5 | |
| IL_5O60_068 | 1/A/1748:1751, 1/A/1762:1766 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_5O60_069 | 1/A/1869:1874, 1/A/2228:2230 | No text annotation | ||
| IL_5O60_070 | 1/A/1881:1883, 1/A/2219:2221 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_5O60_071 | 1/A/1884:1887, 1/A/2217:2218 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_5O60_129 | 1/A/1884:1892, 1/A/2214:2218 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_5O60_072 | 1/A/1887:1892, 1/A/2214:2217 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_5O60_073 | 1/A/1904:1909, 1/A/1914:1920 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5O60_074 | 1/A/1930:1934, 1/A/1960:1963 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_5O60_075 | 1/A/1937:1942, 1/A/1952:1957 | No text annotation | geometric IL_8ZA4_001 IL_76308.6 | |
| IL_5O60_076 | 1/A/1944:1945, 1/A/1948:1950 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_5O60_077 | 1/A/1987:1988, 1/A/2204:2206 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5O60_078 | 1/A/2015:2021, 1/A/2030:2038 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_5O60_079 | 1/A/2054:2057, 1/A/2126:2127 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5O60_080 | 1/A/2058:2059, 1/A/2122:2125 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_5O60_081 | 1/A/2063:2066, 1/A/2117:2118 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_5O60_082 | 1/A/2068:2072, 1/A/2111:2115 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_5O60_083 | 1/A/2073:2078, 1/A/2105:2110 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_5O60_084 | 1/A/2081:2084, 1/A/2098:2102 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_5O60_085 | 1/A/2157:2158, 1/A/2188:2191 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_5O60_086 | 1/A/2158:2169, 1/A/2185:2188 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_5O60_087 | 1/A/2274:2276, 1/A/2841:2842 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5O60_088 | 1/A/2278:2280, 1/A/2836:2839 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_5O60_089 | 1/A/2293:2294, 1/A/2662:2665 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5O60_090 | 1/A/2304:2306, 1/A/2460:2463 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5O60_091 | 1/A/2308:2310, 1/A/2456:2458 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_5O60_092 | 1/A/2317:2319, 1/A/2416:2418 | Isolated non-canonical cWW pair | geometric IL_1KFO_003 NA | |
| IL_5O60_134 | 1/A/2330:2345, 1/A/2399:2405 | No text annotation | ||
| IL_5O60_094 | 1/A/2347:2351, 1/A/2383:2397 | Kink-turn related | homologous IL_5J7L_329 IL_87290.1 | |
| IL_5O60_095 | 1/A/2351:2359, 1/A/2378:2383 | No text annotation | ||
| IL_5O60_096 | 1/A/2425:2427, 1/A/2444:2445 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_5O60_097 | 1/A/2521:2523, 1/A/2541:2545 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_5O60_098 | 1/A/2574:2577, 1/A/2588:2591 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_5O60_099 | 1/A/2625:2627, 1/A/2638:2639 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_5O60_100 | 1/A/2677:2678, 1/A/2722:2724 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_5O60_101 | 1/A/2678:2679, 1/A/2720:2722 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_5O60_102 | 1/A/2681:2683, 1/A/2717:2718 | Major groove platform | homologous IL_7A0S_085 IL_48076.6 | |
| IL_5O60_103 | 1/A/2683:2685, 1/A/2713:2717 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_5O60_104 | 1/A/2685:2687, 1/A/2711:2713 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_28037.2 | |
| IL_5O60_105 | 1/A/2690:2694, 1/A/2704:2708 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_5O60_106 | 1/A/2731:2732, 1/A/2804:2806 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_5O60_107 | 1/A/2734:2736, 1/A/2798:2802 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_5O60_108 | 1/A/2736:2737, 1/A/2795:2798 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_5O60_109 | 1/A/2746:2747, 1/A/2764:2767 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
| IL_5O60_110 | 1/A/2815:2816, 1/A/2825:2827 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5O60_111 | 1/A/2860:2864, 1/A/2998:3006 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5O60_112 | 1/A/2876:2882, 1/A/2887:2892 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_5O60_113 | 1/A/2904:2908, 1/A/2949:2951 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5O60_114 | 1/A/2911:2915, 1/A/2942:2946 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5O60_115 | 1/A/2919:2920, 1/A/2935:2938 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_5O60_116 | 1/A/2961:2966, 1/A/2986:2991 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5O60_117 | 1/A/3059:3061, 1/A/3098:3101 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
| IL_5O60_118 | 1/A/3064:3066, 1/A/3092:3095 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_5O60_119 | 1/A/3068:3073, 1/A/3086:3090 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_5O60_120 | 1/B/3:5, 1/B/113:114 | Single bulged A | geometric IL_4V9F_002 IL_31462.7 | |
| IL_5O60_121 | 1/B/18:19, 1/B/66:68 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_5O60_122 | 1/B/24:30, 1/B/56:61 | No text annotation | ||
| IL_5O60_135 | 1/B/31:32, 1/B/52:55 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_5O60_124 | 1/B/35:39, 1/B/45:49 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.11 | |
| IL_5O60_125 | 1/B/72:80, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5O60_127 | Isolated non-canonical cWW pair | ||
| IL_5O60_034 | Tandem non-canonical cWW pairs | ||
| IL_5O60_055 | No text annotation | ||
| IL_5O60_093 | No text annotation | ||
| IL_5O60_130 | No text annotation | ||
| IL_5O60_123 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5O60_001 | 1/A/27:28, 1/A/562:569, 1/A/596:597 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5O60_017 | 1/A/27:28, 1/A/562:572, 1/A/583:597 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_5O60_018 | 1/A/29:32, 1/A/533:549, 1/A/556:561 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5O60_002 | 1/A/53:54, 1/A/67:73, 1/A/107:111 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5O60_003 | 1/A/317:319, 1/A/457:463, 1/A/487:492 | No text annotation | ||
| J3_5O60_019 | 1/A/325:331, 1/A/350:352, 1/A/443:450 | No text annotation | ||
| J3_5O60_020 | 1/A/378:382, 1/A/398:407, 1/A/419:423 | No text annotation | homologous J3_4WF9_015 J3_46299.2 | |
| J3_5O60_004 | 1/A/798:804, 1/A/888:890, 1/A/906:909 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_5O60_005 | 1/A/813:815, 1/A/847:851, 1/A/875:878 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5O60_006 | 1/A/1173:1175, 1/A/1199:1205, 1/A/1220:1222 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_5O60_007 | 1/A/1413:1418, 1/A/1843:1845, 1/A/1857:1860 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_5O60_008 | 1/A/1421:1424, 1/A/1823:1829, 1/A/1838:1840 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_5O60_009 | 1/A/1459:1465, 1/A/1496:1500, 1/A/1517:1518 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5O60_010 | 1/A/1531:1537, 1/A/1635:1637, 1/A/1801:1804 | No text annotation | ||
| J3_5O60_011 | 1/A/1646:1650, 1/A/1784:1785, 1/A/1788:1793 | No text annotation | geometric J3_4V9F_017 J3_12393.2 | |
| J3_5O60_012 | 1/A/2314:2316, 1/A/2419:2423, 1/A/2447:2452 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_5O60_021 | 1/A/2506:2508, 1/A/2608:2619, 1/A/2645:2651 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_5O60_013 | 1/A/2519:2521, 1/A/2545:2547, 1/A/2556:2561 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
| J3_5O60_014 | 1/A/2741:2744, 1/A/2769:2771, 1/A/2785:2791 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5O60_015 | 1/A/3035:3037, 1/A/3051:3057, 1/A/3103:3107 | No text annotation | ||
| J3_5O60_016 | 1/B/11:17, 1/B/69:71, 1/B/104:107 | No text annotation | ||
| J4_5O60_001 | 1/A/269:274, 1/A/312:317, 1/A/492:494, 1/A/509:512 | No text annotation | ||
| J4_5O60_002 | 1/A/378:382, 1/A/398:401, 1/A/405:407, 1/A/419:423 | No text annotation | homologous J4_4WF9_002 J4_71729.5 | |
| J4_5O60_003 | 1/A/1385:1391, 1/A/1409:1410, 1/A/1863:1866, 1/A/2233:2234 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_5O60_004 | 1/A/1425:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1822 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_5O60_005 | 1/A/1428:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1821 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_5O60_006 | 1/A/1664:1667, 1/A/1686:1688, 1/A/1747:1751, 1/A/1762:1768 | No text annotation | ||
| J4_5O60_007 | 1/A/1989:1993, 1/A/2005:2009, 1/A/2044:2047, 1/A/2199:2203 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_5O60_008 | 1/A/2050:2052, 1/A/2129:2130, 1/A/2148:2157, 1/A/2191:2196 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5O60_009 | 1/A/2509:2513, 1/A/2567:2571, 1/A/2594:2596, 1/A/2605:2607 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5O60_010 | 1/A/2867:2870, 1/A/2898:2900, 1/A/2955:2959, 1/A/2993:2995 | No text annotation | homologous J4_4WF9_009 J4_77044.4 | |
| J5_5O60_001 | 1/A/44:51, 1/A/113:118, 1/A/127:128, 1/A/147:149, 1/A/175:177 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5O60_002 | 1/A/269:274, 1/A/312:319, 1/A/457:463, 1/A/487:494, 1/A/509:512 | No text annotation | ||
| J5_5O60_003 | 1/A/618:620, 1/A/652:656, 1/A/669:671, 1/A/1376:1377, 1/A/2241:2242 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5O60_004 | 1/A/676:681, 1/A/783:786, 1/A/924:927, 1/A/1310:1311, 1/A/1365:1371 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_5O60_005 | 1/A/694:697, 1/A/718:722, 1/A/729:732, 1/A/744:749, 1/A/766:771 | No text annotation | ||
| J5_5O60_006 | 1/A/1892:1900, 1/A/1924:1925, 1/A/1968:1969, 1/A/1973:1981, 1/A/2212:2214 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_5O60_007 | 1/A/2281:2288, 1/A/2670:2677, 1/A/2724:2730, 1/A/2807:2812, 1/A/2830:2835 | No text annotation | ||
| J5_5O60_008 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2506, 1/A/2651:2659 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_5O60_001 | 1/A/42:43, 1/A/178:182, 1/A/213:223, 1/A/231:235, 1/A/262:267, 1/A/514:521 | No text annotation | ||
| J6_5O60_002 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2508, 1/A/2608:2619, 1/A/2645:2659 | No text annotation | ||
| J7_5O60_001 | 1/A/932:937, 1/A/950:951, 1/A/1060:1063, 1/A/1089:1094, 1/A/1105:1109, 1/A/1282:1283, 1/A/1300:1305 | No text annotation | ||
| J8_5O60_001 | 1/A/5:12, 1/A/612:618, 1/A/2242:2247, 1/A/2264:2267, 1/A/2849:2854, 1/A/3012:3015, 1/A/3027:3032, 1/A/3110:3115 | No text annotation |
Problematic loops
No problematic loops
Coloring options: