HL_5O60_015

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5O60|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0924

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5O60|1|A|G|498
5O60|1|A|G|499
5O60|1|A|A|500
5O60|1|A|C|501
5O60|1|A|C|502
5O60|1|A|A|503
5O60|1|A|C|504
5O60|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15