HL_5O60_026

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5O60|1|A|A|896, 5O60|1|A|G|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_026 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.092

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5O60|1|A|U|894
5O60|1|A|G|895
5O60|1|A|A|896
5O60|1|A|A|897
5O60|1|A|A|898
5O60|1|A|G|899
5O60|1|A|G|900

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2