HL_5O60_031

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5O60|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_031 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2124

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5O60|1|A|C|1182
5O60|1|A|U|1183
5O60|1|A|U|1184
5O60|1|A|A|1185
5O60|1|A|G|1186
5O60|1|A|A|1187
5O60|1|A|A|1188
5O60|1|A|G|1189
5O60|1|A|C|1190
5O60|1|A|A|1191
5O60|1|A|G|1192

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16