HL_5O60_040

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

5O60|1|A|G|1674, 5O60|1|A|U|1675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_040 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5947

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5O60|1|A|U|1671
5O60|1|A|C|1672
5O60|1|A|A|1673
5O60|1|A|G|1674
5O60|1|A|U|1675
5O60|1|A|G|1676
5O60|1|A|G|1677
5O60|1|A|U|1678
5O60|1|A|A|1679
5O60|1|A|A|1680
5O60|1|A|U|1681
5O60|1|A|A|1682

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17