HL_5O60_044

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

5O60|1|A|A|1832, 5O60|1|A|A|1834, 5O60|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_044 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1167

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5O60|1|A|C|1830
5O60|1|A|A|1831
5O60|1|A|A|1832
5O60|1|A|C|1833
5O60|1|A|A|1834
5O60|1|A|C|1835
5O60|1|A|A|1836
5O60|1|A|G|1837

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34