HL_5O60_057

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5O60|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_057 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1107

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|A|C|2472
5O60|1|A|U|2473
5O60|1|A|G|2474
5O60|1|A|G|2475
5O60|1|A|G|2476
5O60|1|A|G|2477
5O60|1|A|C|2478
5O60|1|A|G|2479
5O60|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

tRNA CCA-end acetylated (Phe)

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27