HL_5O61_012

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGUAG

Length

5 nucleotides

Bulged bases

5O61|1|A|U|403, 5O61|1|A|A|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_012 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0731

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5O61|1|A|C|401
5O61|1|A|G|402
5O61|1|A|U|403
5O61|1|A|A|404
5O61|1|A|G|405

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4