5O61 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5O61_001 | 1/A/56:65 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_93438.2 | |
| HL_5O61_002 | 1/A/84:93 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_5O61_003 | 1/A/120:125 | No text annotation | homologous HL_9DFE_003 HL_82710.2 | |
| HL_5O61_004 | 1/A/134:141 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
| HL_5O61_005 | 1/A/157:167 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_5O61_006 | 1/A/193:200 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_5O61_007 | 1/A/224:230 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_5O61_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_5O61_009 | 1/A/283:303 | No text annotation | ||
| HL_5O61_112 | 1/A/337:344 | Pseudoknot geometry | geometric HL_4FRN_006 HL_93324.4 | |
| HL_5O61_011 | 1/A/387:394 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_5O61_012 | 1/A/401:405 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_5O61_013 | 1/A/409:417 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_5O61_113 | 1/A/470:480 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_5O61_015 | 1/A/498:505 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_5O61_016 | 1/A/550:555 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_5O61_017 | 1/A/575:580 | GNRA | homologous HL_9DFE_015 HL_37824.8 | |
| HL_5O61_018 | 1/A/634:637 | No text annotation | ||
| HL_5O61_019 | 1/A/658:667 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_5O61_020 | 1/A/705:710 | No text annotation | ||
| HL_5O61_021 | 1/A/723:728 | GNRA | homologous HL_7A0S_020 HL_37824.8 | |
| HL_5O61_022 | 1/A/735:741 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_5O61_023 | 1/A/755:760 | No text annotation | geometric HL_6D12_002 HL_48417.6 | |
| HL_5O61_024 | 1/A/827:834 | No text annotation | homologous HL_9DFE_020 HL_81538.2 | |
| HL_5O61_025 | 1/A/859:868 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_5O61_026 | 1/A/894:900 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_5O61_027 | 1/A/941:946 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_5O61_028 | 1/A/1001:1006 | No text annotation | ||
| HL_5O61_029 | 1/A/1072:1079 | GNRA | homologous HL_7A0S_026 HL_37824.8 | |
| HL_5O61_030 | 1/A/1096:1103 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_5O61_031 | 1/A/1182:1192 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_5O61_032 | 1/A/1210:1217 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_5O61_033 | 1/A/1290:1293 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_5O61_034 | 1/A/1336:1341 | GNRA | homologous HL_4WF9_031 HL_37824.8 | |
| HL_5O61_035 | 1/A/1396:1404 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.9 | |
| HL_5O61_036 | 1/A/1439:1445 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_5O61_037 | 1/A/1478:1483 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_5O61_038 | 1/A/1504:1513 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5O61_039 | 1/A/1582:1589 | No text annotation | ||
| HL_5O61_040 | 1/A/1671:1682 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_5O61_041 | 1/A/1712:1718 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_5O61_042 | 1/A/1753:1760 | No text annotation | ||
| HL_5O61_043 | 1/A/1785:1788 | Mini UNCG | homologous HL_9DFE_037 HL_48778.2 | |
| HL_5O61_044 | 1/A/1830:1837 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_5O61_045 | 1/A/1848:1854 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_5O61_046 | 1/A/1909:1914 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_5O61_047 | 1/A/1945:1948 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
| HL_5O61_048 | 1/A/1969:1973 | No text annotation | homologous HL_9DFE_042 HL_80709.3 | |
| HL_5O61_049 | 1/A/1994:2004 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_5O61_050 | 1/A/2023:2028 | GNRA | homologous HL_9DFE_044 HL_37824.8 | |
| HL_5O61_051 | 1/A/2089:2093 | No text annotation | homologous HL_4WF9_045 NA | |
| HL_5O61_052 | 1/A/2134:2144 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_5O61_053 | 1/A/2173:2181 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5O61_054 | 1/A/2251:2260 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_5O61_055 | 1/A/2366:2371 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_5O61_056 | 1/A/2432:2439 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_5O61_057 | 1/A/2472:2480 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_5O61_058 | 1/A/2488:2500 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_5O61_114 | 1/A/2528:2536 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_5O61_060 | 1/A/2548:2555 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_5O61_061 | 1/A/2579:2586 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_5O61_062 | 1/A/2598:2603 | GNRA | homologous HL_9DFE_056 HL_37824.8 | |
| HL_5O61_063 | 1/A/2628:2637 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_5O61_064 | 1/A/2695:2703 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_5O61_065 | 1/A/2752:2759 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_5O61_066 | 1/A/2775:2781 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_5O61_067 | 1/A/2818:2823 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_5O61_068 | 1/A/2882:2887 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_5O61_069 | 1/A/2925:2930 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_5O61_070 | 1/A/2969:2983 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_5O61_071 | 1/A/3019:3023 | No text annotation | ||
| HL_5O61_072 | 1/A/3040:3048 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_5O61_073 | 1/A/3077:3082 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_5O61_074 | 1/B/35:49 | No text annotation | geometric HL_5NS3_003 HL_97756.2 | |
| HL_5O61_075 | 1/B/39:45 | No text annotation | homologous HL_9DFE_068 HL_47787.2 | |
| HL_5O61_076 | 1/B/85:90 | No text annotation | ||
| HL_5O61_077 | 1/BA/16:26 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_5O61_078 | 1/BA/82:87 | No text annotation | ||
| HL_5O61_079 | 1/BA/155:160 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_5O61_080 | 1/BA/191:196 | No text annotation | ||
| HL_5O61_081 | 1/BA/213:218 | No text annotation | ||
| HL_5O61_082 | 1/BA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_5O61_083 | 1/BA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_5O61_084 | 1/BA/320:333 | No text annotation | ||
| HL_5O61_085 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_5O61_086 | 1/BA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_5O61_087 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5O61_088 | 1/BA/454:459 | No text annotation | ||
| HL_5O61_089 | 1/BA/502:507 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_5O61_090 | 1/BA/597:603 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_5O61_091 | 1/BA/669:678 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_5O61_092 | 1/BA/706:711 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_5O61_093 | 1/BA/766:776 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_5O61_094 | 1/BA/820:828 | No text annotation | ||
| HL_5O61_095 | 1/BA/844:849 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_5O61_096 | 1/BA/879:884 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_5O61_097 | 1/BA/945:954 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_5O61_098 | 1/BA/995:1000 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_5O61_099 | 1/BA/1009:1015 | No text annotation | ||
| HL_5O61_100 | 1/BA/1056:1061 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_5O61_101 | 1/BA/1069:1076 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5O61_102 | 1/BA/1114:1121 | No text annotation | ||
| HL_5O61_103 | 1/BA/1146:1152 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_5O61_104 | 1/BA/1246:1251 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_5O61_105 | 1/BA/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5O61_106 | 1/BA/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5O61_107 | 1/BA/1433:1436 | No text annotation | ||
| HL_5O61_108 | 1/BA/1499:1504 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_5O61_109 | 1/BW/13:22 | tRNA D-loop | homologous HL_5AXM_001 HL_20811.4 | |
| HL_5O61_110 | 1/BW/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
| HL_5O61_111 | 1/BW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4LCK_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5O61_010 | No text annotation | ||
| HL_5O61_014 | No text annotation | ||
| HL_5O61_059 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5O61_001 | 1/A/21:27, 1/A/597:603 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_5O61_002 | 1/A/33:34, 1/A/530:532 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_5O61_003 | 1/A/40:41, 1/A/522:524 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_5O61_004 | 1/A/78:82, 1/A/95:102 | No text annotation | homologous IL_9DFE_004 IL_01488.3 | |
| IL_5O61_005 | 1/A/182:183, 1/A/211:213 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_5O61_006 | 1/A/187:193, 1/A/200:207 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
| IL_5O61_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_26307.2 | |
| IL_5O61_008 | 1/A/322:325, 1/A/450:454 | No text annotation | ||
| IL_5O61_009 | 1/A/356:364, 1/A/438:439 | No text annotation | ||
| IL_5O61_010 | 1/A/369:371, 1/A/432:433 | Single bulged U | geometric IL_4V9F_107 IL_89505.4 | |
| IL_5O61_011 | 1/A/374:376, 1/A/425:429 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_5O61_012 | 1/A/382:384, 1/A/397:398 | Single bulged U | geometric IL_3TZR_002 IL_89505.4 | |
| IL_5O61_013 | 1/A/569:572, 1/A/583:596 | No text annotation | geometric IL_8P9A_243 IL_81516.2 | |
| IL_5O61_014 | 1/A/623:626, 1/A/646:649 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_5O61_015 | 1/A/630:631, 1/A/640:642 | No text annotation | ||
| IL_5O61_016 | 1/A/656:658, 1/A/667:669 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_5O61_017 | 1/A/683:685, 1/A/780:781 | Single bulged A | homologous IL_7A0S_012 IL_31462.7 | |
| IL_5O61_018 | 1/A/699:703, 1/A/712:716 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.2 | |
| IL_5O61_019 | 1/A/787:789, 1/A/921:923 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_5O61_020 | 1/A/789:793, 1/A/914:921 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_5O61_021 | 1/A/812:813, 1/A/878:880 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
| IL_5O61_022 | 1/A/817:818, 1/A/843:845 | Single bulged G | homologous IL_7A0S_017 IL_00225.14 | |
| IL_5O61_023 | 1/A/818:822, 1/A/839:843 | Triple sheared | homologous IL_4WF9_024 IL_50730.2 | |
| IL_5O61_024 | 1/A/853:855, 1/A/872:873 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_5O61_025 | 1/A/890:892, 1/A/902:906 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_5O61_026 | 1/A/952:953, 1/A/1057:1059 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_5O61_027 | 1/A/959:961, 1/A/1048:1051 | Other IL | geometric IL_9DFE_023 IL_44465.1 | |
| IL_5O61_028 | 1/A/959:964, 1/A/1043:1051 | No text annotation | ||
| IL_5O61_029 | 1/A/961:964, 1/A/1043:1048 | No text annotation | ||
| IL_5O61_030 | 1/A/971:977, 1/A/1030:1036 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_5O61_031 | 1/A/977:978, 1/A/1028:1030 | Minor groove platform | homologous IL_9DFE_027 IL_51454.3 | |
| IL_5O61_032 | 1/A/979:984, 1/A/1024:1027 | No text annotation | homologous IL_9DFE_028 IL_26222.2 | |
| IL_5O61_033 | 1/A/986:988, 1/A/1020:1022 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_5O61_034 | 1/A/991:996, 1/A/1012:1017 | No text annotation | geometric IL_8P9A_410 IL_85536.2 | |
| IL_5O61_194 | 1/A/996:997, 1/A/1010:1012 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_5O61_036 | 1/A/1066:1067, 1/A/1084:1086 | Single bulged G | geometric IL_4LVW_002 IL_00225.14 | |
| IL_5O61_037 | 1/A/1112:1114, 1/A/1278:1279 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5O61_038 | 1/A/1116:1120, 1/A/1272:1276 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_5O61_039 | 1/A/1122:1129, 1/A/1269:1270 | SSU/LSU pseudoknot | homologous IL_9DFE_036 IL_41203.4 | |
| IL_5O61_040 | 1/A/1129:1131, 1/A/1268:1269 | Single bulged U | homologous IL_4WF9_038 IL_89505.4 | |
| IL_5O61_041 | 1/A/1136:1142, 1/A/1258:1263 | Kink-turn related | homologous IL_5J7L_280 IL_57188.5 | |
| IL_5O61_042 | 1/A/1142:1148, 1/A/1242:1258 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
| IL_5O61_043 | 1/A/1149:1152, 1/A/1239:1241 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_5O61_044 | 1/A/1161:1169, 1/A/1226:1230 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_5O61_045 | 1/A/1177:1180, 1/A/1194:1197 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_5O61_046 | 1/A/1205:1209, 1/A/1218:1220 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_5O61_047 | 1/A/1311:1313, 1/A/1362:1365 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_5O61_048 | 1/A/1322:1329, 1/A/1349:1353 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_5O61_049 | 1/A/1333:1334, 1/A/1343:1345 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_5O61_050 | 1/A/1377:1384, 1/A/2235:2241 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_5O61_051 | 1/A/1425:1428, 1/A/1821:1822 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_50694.7 | |
| IL_5O61_052 | 1/A/1434:1438, 1/A/1446:1448 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_5O61_053 | 1/A/1466:1470, 1/A/1491:1495 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_5O61_054 | 1/A/1472:1476, 1/A/1485:1489 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_5O61_055 | 1/A/1529:1531, 1/A/1804:1806 | Isolated non-canonical cWW pair | geometric IL_8CRE_456 IL_87907.2 | |
| IL_5O61_056 | 1/A/1540:1543, 1/A/1627:1632 | No text annotation | ||
| IL_5O61_057 | 1/A/1550:1557, 1/A/1614:1620 | No text annotation | ||
| IL_5O61_058 | 1/A/1560:1562, 1/A/1609:1611 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_28037.2 | |
| IL_5O61_059 | 1/A/1562:1567, 1/A/1604:1609 | No text annotation | ||
| IL_5O61_060 | 1/A/1571:1572, 1/A/1598:1600 | No text annotation | ||
| IL_5O61_061 | 1/A/1573:1576, 1/A/1595:1597 | No text annotation | ||
| IL_5O61_062 | 1/A/1638:1642, 1/A/1797:1800 | Other IL | homologous IL_4WF9_054 IL_99646.2 | |
| IL_5O61_063 | 1/A/1653:1656, 1/A/1777:1781 | tWW and near cWH | geometric IL_6DLR_005 IL_04785.1 | |
| IL_5O61_064 | 1/A/1658:1661, 1/A/1771:1775 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_5O61_065 | 1/A/1689:1692, 1/A/1742:1746 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_5O61_066 | 1/A/1694:1699, 1/A/1735:1740 | No text annotation | ||
| IL_5O61_067 | 1/A/1702:1703, 1/A/1726:1732 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_5O61_068 | 1/A/1709:1711, 1/A/1719:1720 | No text annotation | ||
| IL_5O61_069 | 1/A/1869:1874, 1/A/2228:2230 | No text annotation | ||
| IL_5O61_070 | 1/A/1881:1883, 1/A/2219:2221 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_5O61_071 | 1/A/1884:1887, 1/A/2217:2218 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
| IL_5O61_072 | 1/A/1884:1892, 1/A/2214:2218 | No text annotation | geometric IL_4WF9_117 IL_22854.4 | |
| IL_5O61_073 | 1/A/1887:1892, 1/A/2214:2217 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_5O61_074 | 1/A/1904:1909, 1/A/1914:1920 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_5O61_075 | 1/A/1930:1934, 1/A/1960:1963 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_5O61_076 | 1/A/1937:1942, 1/A/1952:1957 | No text annotation | geometric IL_8ZA4_001 IL_76308.6 | |
| IL_5O61_077 | 1/A/1944:1945, 1/A/1948:1950 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_5O61_078 | 1/A/1987:1988, 1/A/2204:2206 | Single bulged A | homologous IL_9DFE_069 IL_31462.7 | |
| IL_5O61_079 | 1/A/2015:2021, 1/A/2030:2038 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_5O61_080 | 1/A/2054:2057, 1/A/2126:2127 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5O61_081 | 1/A/2058:2059, 1/A/2122:2125 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_5O61_082 | 1/A/2063:2066, 1/A/2117:2118 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_5O61_083 | 1/A/2068:2072, 1/A/2111:2115 | No text annotation | homologous IL_9DFE_074 IL_89021.2 | |
| IL_5O61_084 | 1/A/2073:2078, 1/A/2105:2110 | No text annotation | geometric IL_8P9A_451 IL_85536.2 | |
| IL_5O61_085 | 1/A/2081:2084, 1/A/2098:2102 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_5O61_086 | 1/A/2157:2158, 1/A/2188:2191 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_5O61_087 | 1/A/2158:2169, 1/A/2185:2188 | No text annotation | homologous IL_5J7L_319 IL_42218.2 | |
| IL_5O61_088 | 1/A/2274:2276, 1/A/2841:2842 | Major groove platform | homologous IL_4WF9_078 IL_48076.6 | |
| IL_5O61_089 | 1/A/2278:2280, 1/A/2836:2839 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_5O61_090 | 1/A/2293:2294, 1/A/2662:2665 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_5O61_091 | 1/A/2304:2306, 1/A/2460:2463 | No text annotation | homologous IL_9DFE_082 IL_85599.2 | |
| IL_5O61_092 | 1/A/2308:2310, 1/A/2456:2458 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_5O61_093 | 1/A/2317:2319, 1/A/2416:2418 | Isolated non-canonical cWW pair | geometric IL_8P9A_432 IL_87907.2 | |
| IL_5O61_195 | 1/A/2330:2345, 1/A/2399:2405 | No text annotation | ||
| IL_5O61_095 | 1/A/2347:2351, 1/A/2383:2397 | Kink-turn related | homologous IL_5J7L_329 IL_87290.1 | |
| IL_5O61_096 | 1/A/2351:2359, 1/A/2378:2383 | No text annotation | ||
| IL_5O61_097 | 1/A/2425:2427, 1/A/2444:2445 | Single bulged G | homologous IL_4WF9_125 IL_00225.14 | |
| IL_5O61_098 | 1/A/2521:2523, 1/A/2541:2545 | No text annotation | homologous IL_9DFE_088 IL_61476.2 | |
| IL_5O61_099 | 1/A/2574:2577, 1/A/2588:2591 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_5O61_100 | 1/A/2625:2627, 1/A/2638:2639 | Single bulged U | geometric IL_8TQX_001 IL_89505.4 | |
| IL_5O61_101 | 1/A/2677:2678, 1/A/2722:2724 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_5O61_102 | 1/A/2678:2679, 1/A/2720:2722 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_5O61_103 | 1/A/2681:2683, 1/A/2717:2718 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_5O61_104 | 1/A/2683:2685, 1/A/2713:2717 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_51387.3 | |
| IL_5O61_105 | 1/A/2685:2687, 1/A/2711:2713 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_28037.2 | |
| IL_5O61_106 | 1/A/2690:2694, 1/A/2704:2708 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_5O61_107 | 1/A/2731:2732, 1/A/2804:2806 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_5O61_108 | 1/A/2734:2736, 1/A/2798:2802 | No text annotation | homologous IL_9DFE_097 IL_07785.1 | |
| IL_5O61_109 | 1/A/2736:2737, 1/A/2795:2798 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_5O61_110 | 1/A/2746:2747, 1/A/2764:2767 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_5O61_111 | 1/A/2815:2816, 1/A/2825:2827 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_5O61_112 | 1/A/2860:2864, 1/A/2998:3006 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_5O61_113 | 1/A/2876:2882, 1/A/2887:2892 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_5O61_114 | 1/A/2904:2908, 1/A/2949:2951 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_5O61_115 | 1/A/2911:2915, 1/A/2942:2946 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_5O61_116 | 1/A/2919:2920, 1/A/2935:2938 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_5O61_117 | 1/A/2961:2966, 1/A/2986:2991 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5O61_118 | 1/A/3059:3061, 1/A/3098:3101 | No text annotation | ||
| IL_5O61_119 | 1/A/3064:3066, 1/A/3092:3095 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_5O61_120 | 1/A/3068:3073, 1/A/3086:3090 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_5O61_121 | 1/B/3:5, 1/B/113:114 | Single bulged A | geometric IL_4V9F_002 IL_31462.7 | |
| IL_5O61_122 | 1/B/18:19, 1/B/66:68 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_5O61_123 | 1/B/24:30, 1/B/56:61 | No text annotation | ||
| IL_5O61_196 | 1/B/31:32, 1/B/52:55 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_5O61_125 | 1/B/35:39, 1/B/45:49 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
| IL_5O61_126 | 1/B/72:80, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_5O61_127 | 1/BA/34:36, 1/BA/532:533 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_5O61_128 | 1/BA/48:49, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_5O61_129 | 1/BA/51:56, 1/BA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_5O61_130 | 1/BA/58:60, 1/BA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_5O61_131 | 1/BA/67:70, 1/BA/99:100 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_5O61_132 | 1/BA/71:73, 1/BA/95:98 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_5O61_133 | 1/BA/74:77, 1/BA/93:94 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_5O61_134 | 1/BA/77:78, 1/BA/91:93 | Major groove platform | geometric IL_5J7L_392 IL_48076.6 | |
| IL_5O61_135 | 1/BA/125:128, 1/BA/231:232 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_5O61_136 | 1/BA/129:133, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5O61_137 | 1/BA/144:150, 1/BA/165:172 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_5O61_138 | 1/BA/187:188, 1/BA/199:201 | No text annotation | ||
| IL_5O61_139 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_5O61_140 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5O61_141 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5O61_142 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_5O61_143 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_5O61_144 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_5O61_145 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5O61_146 | 1/BA/440:442, 1/BA/472:477 | No text annotation | geometric IL_5J7L_021 IL_33323.1 | |
| IL_5O61_147 | 1/BA/446:450, 1/BA/463:468 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_5O61_148 | 1/BA/450:453, 1/BA/460:463 | No text annotation | ||
| IL_5O61_149 | 1/BA/484:491, 1/BA/520:521 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_5O61_150 | 1/BA/495:501, 1/BA/508:516 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5O61_151 | 1/BA/549:555, 1/BA/862:863 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_5O61_152 | 1/BA/560:564, 1/BA/737:741 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_5O61_153 | 1/BA/574:576, 1/BA/624:625 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5O61_154 | 1/BA/577:578, 1/BA/620:623 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_5O61_155 | 1/BA/585:591, 1/BA/609:613 | No text annotation | ||
| IL_5O61_156 | 1/BA/634:635, 1/BA/731:734 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_5O61_157 | 1/BA/637:638, 1/BA/727:729 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5O61_158 | 1/BA/642:646, 1/BA/720:723 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_5O61_159 | 1/BA/653:657, 1/BA/693:697 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5O61_160 | 1/BA/664:668, 1/BA/679:686 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_5O61_161 | 1/BA/754:758, 1/BA/784:785 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_5O61_162 | 1/BA/759:763, 1/BA/779:783 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_5O61_163 | 1/BA/869:876, 1/BA/887:892 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_5O61_164 | 1/BA/904:905, 1/BA/1376:1378 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_5O61_165 | 1/BA/907:909, 1/BA/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_5O61_166 | 1/BA/915:917, 1/BA/1363:1367 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_5O61_167 | 1/BA/935:936, 1/BA/1207:1209 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_5O61_168 | 1/BA/975:979, 1/BA/1024:1025 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_5O61_169 | 1/BA/984:985, 1/BA/1017:1019 | Single stack bend | homologous IL_4LFB_041 IL_90729.1 | |
| IL_5O61_170 | 1/BA/1028:1030, 1/BA/1189:1190 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_5O61_171 | 1/BA/1032:1036, 1/BA/1185:1187 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_5O61_172 | 1/BA/1037:1038, 1/BA/1180:1184 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_5O61_173 | 1/BA/1040:1041, 1/BA/1176:1178 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
| IL_5O61_174 | 1/BA/1041:1043, 1/BA/1174:1176 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_5O61_175 | 1/BA/1104:1108, 1/BA/1125:1130 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_5O61_176 | 1/BA/1109:1112, 1/BA/1123:1124 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_5O61_177 | 1/BA/1139:1142, 1/BA/1156:1162 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5O61_178 | 1/BA/1228:1234, 1/BA/1265:1272 | No text annotation | ||
| IL_5O61_179 | 1/BA/1236:1239, 1/BA/1258:1263 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_5O61_180 | 1/BA/1240:1244, 1/BA/1253:1257 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_5O61_181 | 1/BA/1285:1290, 1/BA/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5O61_182 | 1/BA/1382:1384, 1/BA/1485:1488 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_5O61_183 | 1/BA/1384:1387, 1/BA/1481:1485 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_5O61_184 | 1/BA/1388:1390, 1/BA/1478:1480 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_5O61_185 | 1/BA/1390:1392, 1/BA/1475:1478 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_57744.1 | |
| IL_5O61_186 | 1/BA/1395:1397, 1/BA/1470:1472 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5O61_187 | 1/BA/1399:1402, 1/BA/1465:1468 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5O61_197 | 1/BA/1407:1410, 1/BA/1457:1460 | No text annotation | geometric IL_8P9A_327 IL_85033.2 | |
| IL_5O61_189 | 1/BA/1413:1418, 1/BA/1450:1454 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_5O61_190 | 1/BA/1418:1420, 1/BA/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_5O61_191 | 1/BA/1423:1426, 1/BA/1443:1445 | No text annotation | geometric IL_9DFE_082 IL_85599.2 | |
| IL_5O61_192 | 1/BA/1428:1431, 1/BA/1439:1441 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_5O61_193 | 1/BA/1432:1433, 1/BA/1436:1438 | No text annotation | geometric IL_8CRE_053 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5O61_035 | Isolated non-canonical cWW pair | ||
| IL_5O61_094 | No text annotation | ||
| IL_5O61_124 | 8-nt loop receptor | ||
| IL_5O61_188 | Partly complementary |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5O61_001 | 1/A/27:28, 1/A/562:569, 1/A/596:597 | No text annotation | geometric J3_4WF9_010 J3_60031.2 | |
| J3_5O61_002 | 1/A/27:28, 1/A/562:572, 1/A/583:597 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_5O61_003 | 1/A/29:32, 1/A/533:549, 1/A/556:561 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5O61_004 | 1/A/53:54, 1/A/67:73, 1/A/107:111 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_5O61_005 | 1/A/317:319, 1/A/457:463, 1/A/487:492 | No text annotation | ||
| J3_5O61_006 | 1/A/325:331, 1/A/350:352, 1/A/443:450 | No text annotation | ||
| J3_5O61_007 | 1/A/378:382, 1/A/398:407, 1/A/419:423 | No text annotation | homologous J3_4WF9_015 J3_46299.2 | |
| J3_5O61_008 | 1/A/798:804, 1/A/888:890, 1/A/906:909 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_5O61_009 | 1/A/813:815, 1/A/847:851, 1/A/875:878 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
| J3_5O61_010 | 1/A/1173:1175, 1/A/1199:1205, 1/A/1220:1222 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_5O61_011 | 1/A/1413:1418, 1/A/1843:1845, 1/A/1857:1860 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_5O61_012 | 1/A/1421:1424, 1/A/1823:1829, 1/A/1838:1840 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_5O61_013 | 1/A/1459:1465, 1/A/1496:1500, 1/A/1517:1518 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_5O61_014 | 1/A/1531:1537, 1/A/1635:1637, 1/A/1801:1804 | No text annotation | ||
| J3_5O61_015 | 1/A/1646:1650, 1/A/1784:1785, 1/A/1788:1793 | No text annotation | geometric J3_4V9F_017 J3_12393.2 | |
| J3_5O61_016 | 1/A/2314:2316, 1/A/2419:2423, 1/A/2447:2452 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_5O61_017 | 1/A/2506:2508, 1/A/2608:2619, 1/A/2645:2651 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_5O61_018 | 1/A/2519:2521, 1/A/2545:2547, 1/A/2556:2561 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
| J3_5O61_019 | 1/A/2741:2744, 1/A/2769:2771, 1/A/2785:2791 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_5O61_020 | 1/A/3035:3037, 1/A/3051:3057, 1/A/3103:3107 | No text annotation | ||
| J3_5O61_021 | 1/B/11:17, 1/B/69:71, 1/B/104:107 | No text annotation | ||
| J3_5O61_022 | 1/BA/50:51, 1/BA/361:367, 1/BA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_5O61_023 | 1/BA/50:56, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_5O61_024 | 1/BA/566:568, 1/BA/631:634, 1/BA/734:735 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_5O61_025 | 1/BA/566:568, 1/BA/631:635, 1/BA/731:735 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_5O61_026 | 1/BA/652:653, 1/BA/697:705, 1/BA/712:714 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_5O61_027 | 1/BA/806:809, 1/BA/839:843, 1/BA/850:856 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_5O61_028 | 1/BA/918:921, 1/BA/1326:1332, 1/BA/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5O61_029 | 1/BA/925:928, 1/BA/1216:1218, 1/BA/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_5O61_030 | 1/BA/937:944, 1/BA/955:966, 1/BA/1202:1206 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_5O61_031 | 1/BA/972:975, 1/BA/1025:1027, 1/BA/1191:1196 | No text annotation | ||
| J3_5O61_032 | 1/BA/972:979, 1/BA/1024:1027, 1/BA/1191:1196 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_5O61_033 | 1/BA/985:989, 1/BA/1006:1009, 1/BA/1015:1017 | No text annotation | ||
| J3_5O61_034 | 1/BA/1043:1048, 1/BA/1087:1093, 1/BA/1168:1174 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5O61_039 | 1/BA/1053:1054, 1/BA/1063:1066, 1/BA/1079:1082 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5O61_036 | 1/BA/1096:1098, 1/BA/1136:1139, 1/BA/1162:1165 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_5O61_037 | 1/BA/1096:1098, 1/BA/1136:1142, 1/BA/1156:1165 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5O61_038 | 1/BA/1218:1222, 1/BA/1278:1285, 1/BA/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_5O61_001 | 1/A/269:274, 1/A/312:317, 1/A/492:494, 1/A/509:512 | No text annotation | ||
| J4_5O61_002 | 1/A/378:382, 1/A/398:401, 1/A/405:407, 1/A/419:423 | No text annotation | homologous J4_4WF9_002 J4_71729.5 | |
| J4_5O61_003 | 1/A/1385:1391, 1/A/1409:1410, 1/A/1863:1866, 1/A/2233:2234 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_5O61_004 | 1/A/1425:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1822 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_5O61_005 | 1/A/1428:1429, 1/A/1453:1458, 1/A/1519:1520, 1/A/1815:1821 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_5O61_006 | 1/A/1664:1667, 1/A/1686:1688, 1/A/1747:1751, 1/A/1762:1768 | No text annotation | ||
| J4_5O61_007 | 1/A/1989:1993, 1/A/2005:2009, 1/A/2044:2047, 1/A/2199:2203 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_5O61_008 | 1/A/2050:2052, 1/A/2129:2130, 1/A/2148:2157, 1/A/2191:2196 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5O61_009 | 1/A/2509:2513, 1/A/2567:2571, 1/A/2594:2596, 1/A/2605:2607 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5O61_015 | 1/A/2867:2870, 1/A/2898:2900, 1/A/2955:2959, 1/A/2993:2995 | No text annotation | homologous J4_4WF9_009 J4_77044.4 | |
| J4_5O61_011 | 1/BA/111:119, 1/BA/238:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | ||
| J4_5O61_016 | 1/BA/140:141, 1/BA/175:181, 1/BA/207:212, 1/BA/219:220 | No text annotation | ||
| J4_5O61_013 | 1/BA/555:557, 1/BA/744:749, 1/BA/790:801, 1/BA/861:862 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_5O61_014 | 1/BW/7:10, 1/BW/25:27, 1/BW/43:49, 1/BW/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.29 | |
| J5_5O61_001 | 1/A/44:51, 1/A/113:118, 1/A/127:128, 1/A/147:149, 1/A/175:177 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5O61_002 | 1/A/269:274, 1/A/312:319, 1/A/457:463, 1/A/487:494, 1/A/509:512 | No text annotation | ||
| J5_5O61_003 | 1/A/618:620, 1/A/652:656, 1/A/669:671, 1/A/1376:1377, 1/A/2241:2242 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5O61_004 | 1/A/676:681, 1/A/783:786, 1/A/924:927, 1/A/1310:1311, 1/A/1365:1371 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_5O61_005 | 1/A/694:697, 1/A/718:722, 1/A/729:732, 1/A/744:749, 1/A/766:771 | No text annotation | ||
| J5_5O61_006 | 1/A/1892:1900, 1/A/1924:1925, 1/A/1968:1969, 1/A/1973:1981, 1/A/2212:2214 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_5O61_007 | 1/A/2281:2288, 1/A/2670:2677, 1/A/2724:2730, 1/A/2807:2812, 1/A/2830:2835 | No text annotation | ||
| J5_5O61_008 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2506, 1/A/2651:2659 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_5O61_009 | 1/BA/40:43, 1/BA/403:406, 1/BA/436:440, 1/BA/477:480, 1/BA/525:528 | No text annotation | ||
| J5_5O61_010 | 1/BA/40:43, 1/BA/403:406, 1/BA/436:442, 1/BA/472:480, 1/BA/525:528 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_5O61_011 | 1/BA/62:65, 1/BA/102:109, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_5O61_001 | 1/A/42:43, 1/A/178:182, 1/A/213:223, 1/A/231:235, 1/A/262:267, 1/A/514:521 | No text annotation | ||
| J6_5O61_002 | 1/A/2297:2300, 1/A/2467:2470, 1/A/2482:2483, 1/A/2505:2508, 1/A/2608:2619, 1/A/2645:2659 | No text annotation | ||
| J7_5O61_001 | 1/A/932:937, 1/A/950:951, 1/A/1060:1063, 1/A/1089:1094, 1/A/1105:1109, 1/A/1282:1283, 1/A/1300:1305 | No text annotation | ||
| J8_5O61_001 | 1/A/5:12, 1/A/612:618, 1/A/2242:2247, 1/A/2264:2267, 1/A/2849:2854, 1/A/3012:3015, 1/A/3027:3032, 1/A/3110:3115 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5O61_035 | No text annotation | ||
| J4_5O61_010 | No text annotation | ||
| J4_5O61_012 | No text annotation |
Coloring options: