HL_5O61_038

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5O61|1|A|U|1511, 5O61|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_038 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1508

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|1504
5O61|1|A|U|1505
5O61|1|A|U|1506
5O61|1|A|G|1507
5O61|1|A|A|1508
5O61|1|A|U|1509
5O61|1|A|A|1510
5O61|1|A|U|1511
5O61|1|A|U|1512
5O61|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23