3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
5O61|1|A|U|1911
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5O61_046 not in the Motif Atlas
Homologous match to HL_5J7L_175
Geometric discrepancy: 0.1115
The information below is about HL_5J7L_175
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

5O61|1|A|C|1909
5O61|1|A|U|1910
5O61|1|A|U|1911
5O61|1|A|C|1912
5O61|1|A|G|1913
5O61|1|A|G|1914

Current chains

Chain A
23S rRNA

Nearby chains

Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain BB
Conserved domain protein
Chain C
50S ribosomal protein L2

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