HL_5O61_054

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

5O61|1|A|A|2254, 5O61|1|A|A|2255, 5O61|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_054 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1362

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|2251
5O61|1|A|U|2252
5O61|1|A|A|2253
5O61|1|A|A|2254
5O61|1|A|A|2255
5O61|1|A|G|2256
5O61|1|A|A|2257
5O61|1|A|U|2258
5O61|1|A|G|2259
5O61|1|A|C|2260

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32