HL_5O61_083

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_083 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0647

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5O61|1|BA|U|296
5O61|1|BA|G|297
5O61|1|BA|A|298
5O61|1|BA|G|299
5O61|1|BA|A|300
5O61|1|BA|G|301

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BE

30S ribosomal protein S5

Chain BQ

30S ribosomal protein S17