HL_5O61_098

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_098 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2386

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5O61|1|BA|A|995
5O61|1|BA|G|996
5O61|1|BA|A|997
5O61|1|BA|G|998
5O61|1|BA|A|999
5O61|1|BA|U|1000

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14 type Z

Chain BS

30S ribosomal protein S19