HL_5O61_105

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_105 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.079

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5O61|1|BA|C|1296
5O61|1|BA|U|1297
5O61|1|BA|G|1298
5O61|1|BA|C|1299
5O61|1|BA|A|1300
5O61|1|BA|A|1301
5O61|1|BA|C|1302
5O61|1|BA|U|1303
5O61|1|BA|C|1304
5O61|1|BA|G|1305

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14 type Z

Chain BS

30S ribosomal protein S19