HL_5OA3_019

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OA3_019 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4803

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5OA3|1|2|U|885
5OA3|1|2|A|886
5OA3|1|2|U|887
5OA3|1|2|U|888
5OA3|1|2|U|889
5OA3|1|2|U|890
5OA3|1|2|G|891
5OA3|1|2|U|892
5OA3|1|2|U|893
5OA3|1|2|G|894
5OA3|1|2|G|895
5OA3|1|2|U|896
5OA3|1|2|U|897
5OA3|1|2|U|898
5OA3|1|2|U|899
5OA3|1|2|C|900
5OA3|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains