HL_5OA3_020

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OA3_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.132

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5OA3|1|2|A|957
5OA3|1|2|G|958
5OA3|1|2|G|959
5OA3|1|2|U|960
5OA3|1|2|G|961
5OA3|1|2|A|962
5OA3|1|2|A|963
5OA3|1|2|A|964
5OA3|1|2|U|965
5OA3|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 2D

Chain O

40S ribosomal protein S14