HL_5OB3_001

3D structure

PDB id

5OB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

iSpinach aptamer

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

GUACGC

Length

6 nucleotides

Bulged bases

5OB3|1|A|A|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_79299.7

Basepair signature

cWW-tSW-R

Number of instances in this motif group

53

Unit IDs

5OB3|1|A|G|30
5OB3|1|A|U|31
5OB3|1|A|A|32
5OB3|1|A|C|33
5OB3|1|A|G|34
5OB3|1|A|C|35

Current chains

Chain A

RNA aptamer (69-MER)

Nearby chains