Motif HL_79299.7 Version HL_79299.7 of this group appears in releases 3.28 to 3.44
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4U7U_001 | 4U7U | 0.5202 | 1 | UNCG | L | crRNA | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | cWW | tSW |
| 2 | HL_6CK5_001 | 6CK5 | 0.6754 | 1 | A | Guanidine-I riboswitch | A | 27 | U | 28 | U | 30 | G | 31 | U | 32 | cWW | tSW | |
| 3 | HL_5OB3_001 | 5OB3 | 0.6441 | 1 | UNCG | A | RNA aptamer (69-MER) | G | 30 | U | 31 | C | 33 | G | 34 | C | 35 | cWW | tSW |
| 4 | HL_3IGI_008 | 3IGI | 0.2940 | 1 | UNCG | A | Group IIC intron | G | 338 | U | 339 | C | 341 | G | 342 | C | 343 | cWW | tSW |
| 5 | HL_6DLR_002 | 6DLR | 0.2499 | 1 | A | Guanidine-I riboswitch | A | 61 | U | 62 | C | 64 | G | 65 | U | 66 | cWW | tSW | |
| 6 | HL_5ML7_002 | 5ML7 | 0.2076 | 1 | UNCG | B | 23S ribosomal RNA | C | 2187 | G | 2188 | U | 2190 | A | 2191 | G | 2192 | cWW | |
| 7 | HL_1NBS_006 | 1NBS | 0.2020 | 1 | UNCG | B | RNase P class B | C | 152 | U | 153 | C | 155 | G | 156 | G | 157 | cWW | tSW |
| 8 | HL_6CZR_080 | 6CZR | 0.1347 | 1 | 1a | SSU rRNA | C | 338 | U | 339 | C | 341 | G | 342 | G | 343 | cWW | tSW | |
| 9 | HL_4V88_196 | 4V88 | 0.1254 | 1 | UNCG | A6 | SSU rRNA | C | 414 | C | 415 | A | 417 | G | 418 | G | 419 | cWW | tSW |
| 10 | HL_5J7L_011 | 5J7L | 0.0844 | 1 | UNCG | AA | SSU rRNA | C | 419 | U | 420 | C | 422 | G | 423 | G | 424 | cWW | tSW |
| 11 | HL_5J7L_030 | 5J7L | 0.1272 | 1 | UNCG | AA | SSU rRNA | C | 1449 | U | 1450 | C | 1452 | G | 1453 | G | 1454 | cWW | tSW |
| 12 | HL_4LFB_011 | 4LFB | 0.0980 | 1 | UNCG | A | SSU rRNA | C | 419 | U | 420 | C | 422 | G | 423 | G | 424 | cWW | tSW |
| 13 | HL_4WF9_040 | 4WF9 | 0.1586 | 1 | UNCG | X | LSU rRNA | C | 1735 | U | 1736 | C | 1738 | G | 1739 | G | 1740 | cWW | tSW |
| 14 | HL_4IOA_041 | 4IOA | 0.1487 | 1 | UNCG | X | LSU rRNA | C | 1708 | U | 1709 | C | 1711 | G | 1712 | G | 1713 | cWW | tSW |
| 15 | HL_5J7L_175 | 5J7L | 0.0982 | 1 | UNCG | DA | LSU rRNA | C | 1691 | U | 1692 | C | 1694 | G | 1695 | G | 1696 | cWW | tSW |
| 16 | HL_4Y4O_144 | 4Y4O | 0.0931 | 1 | UNCG | 2A | LSU rRNA | C | 1691 | U | 1692 | C | 1694 | G | 1695 | G | 1696 | cWW | tSW |
| 17 | HL_4PMI_006 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53||||6_445 | U | 54||||6_445 | C | 56||||6_445 | G | 57||||6_445 | G | 58||||6_445 | cWW | tSW |
| 18 | HL_4PMI_004 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53 | U | 54 | C | 56 | G | 57 | G | 58 | cWW | tSW |
| 19 | HL_4PMI_005 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53||||24_444 | U | 54||||24_444 | C | 56||||24_444 | G | 57||||24_444 | G | 58||||24_444 | cWW | tSW |
| 20 | HL_4PMI_003 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53||||18_445 | U | 54||||18_445 | C | 56||||18_445 | G | 57||||18_445 | G | 58||||18_445 | cWW | tSW |
| 21 | HL_4PMI_001 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53||||12_455 | U | 54||||12_455 | C | 56||||12_455 | G | 57||||12_455 | G | 58||||12_455 | cWW | tSW |
| 22 | HL_4PMI_002 | 4PMI | 0.1085 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53||||13_455 | U | 54||||13_455 | C | 56||||13_455 | G | 57||||13_455 | G | 58||||13_455 | cWW | tSW |
| 23 | HL_1I6U_001 | 1I6U | 0.1533 | 1 | UNCG | C | 16S RRNA FRAGMENT | C | 16 | U | 17 | C | 19 | G | 20 | G | 21 | cWW | tSW |
| 24 | HL_2HW8_001 | 2HW8 | 0.1134 | 1 | UNCG | B | 36-MER | C | 15 | U | 16 | C | 18 | G | 19 | G | 20 | cWW | tSW |
| 25 | HL_3U4M_001 | 3U4M | 0.1349 | 1 | UNCG | B | LSU rRNA | C | 2143 | U | 2144 | C | 2146 | G | 2147 | G | 2148 | cWW | tSW |
| 26 | HL_6SY6_001 | 6SY6 | 0.1162 | 1 | D | RNA (36-MER) | C | 19 | U | 20 | C | 22 | G | 23 | G | 24 | cWW | tSW | |
| 27 | HL_4AY2_001 | 4AY2 | 0.1291 | 1 | UNCG | C | 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3' | C | 8 | U | 9 | C | 11 | G | 12 | G | 13 | cWW | tSW |
| 28 | HL_1UN6_003 | 1UN6 | 0.1167 | 1 | UNCG | F | 5S RIBOSOMAL RNA | C | 15 | U | 16 | C | 18 | G | 19 | G | 64 | cWW | tSW |
| 29 | HL_6QN3_003 | 6QN3 | 0.1206 | 1 | B | Glutamine-II | C | 9 | U | 10 | C | 12 | G | 13 | G | 14 | cWW | tSW | |
| 30 | HL_4JF2_003 | 4JF2 | 0.0947 | 1 | UNCG | A | PreQ1-II Riboswitch | C | 60 | U | 61 | C | 63 | G | 64 | G | 65 | cWW | tSW |
| 31 | HL_5LYS_002 | 5LYS | 0.0919 | 1 | UNCG | B | 7SK RNA | C | 48 | U | 48|||A | C | 48|||C | G | 48|||D | G | 60 | cWW | tSW |
| 32 | HL_5Y85_004 | 5Y85 | 0.0000 | 1 | UNCG | D | DNA/RNA (50-MER) | C | 28 | U | 29 | C | 31 | G | 32 | G | 33 | cWW | tSW |
| 33 | HL_5D5L_003 | 5D5L | 0.0752 | 1 | UNCG | A | PreQ1-II riboswitch | C | 60 | U | 61 | C | 63 | G | 64 | G | 65 | cWW | tSW |
| 34 | HL_6QN3_001 | 6QN3 | 0.1098 | 1 | A | Glutamine-II | C | 9 | U | 10 | C | 12 | G | 13 | G | 14 | cWW | tSW | |
| 35 | HL_4LFB_031 | 4LFB | 0.1219 | 1 | UNCG | A | SSU rRNA | C | 1449 | U | 1450 | C | 1452 | G | 1453 | G | 1454 | cWW | tSW |
| 36 | HL_4PDB_001 | 4PDB | 0.1036 | 1 | UNCG | I | SELEX RNA aptamer | C | 17 | U | 18 | C | 20 | G | 21 | G | 22 | cWW | tSW |
| 37 | HL_4V9F_044 | 4V9F | 0.0995 | 1 | UNCG | 0 | LSU rRNA | C | 1769 | U | 1770 | C | 1772 | G | 1773 | G | 1774 | cWW | tSW |
| 38 | HL_4LFB_009 | 4LFB | 0.1122 | 1 | UNCG | A | SSU rRNA | C | 342 | U | 343 | C | 345 | G | 346 | G | 347 | cWW | tSW |
| 39 | HL_5J7L_009 | 5J7L | 0.1551 | 1 | UNCG | AA | SSU rRNA | C | 342 | U | 343 | C | 345 | G | 346 | G | 347 | cWW | tSW |
| 40 | HL_5TBW_043 | 5TBW | 0.1616 | 1 | UNCG | 1 | LSU rRNA | C | 1923 | U | 1924 | C | 1926 | G | 1927 | G | 1928 | cWW | tSW |
| 41 | HL_1KUQ_001 | 1KUQ | 0.1469 | 1 | UNCG | B | 16S RIBOSOMAL RNA FRAGMENT | C | 8 | U | 9 | C | 11 | G | 12 | G | 13 | cWW | tSW |
| 42 | HL_5J7L_171 | 5J7L | 0.2082 | 1 | UNCG | DA | LSU rRNA | C | 1533 | U | 1534 | C | 1536 | G | 1537 | G | 1538 | cWW | tSW |
| 43 | HL_6CZR_082 | 6CZR | 0.3395 | 1 | 1a | SSU rRNA | C | 415 | U | 416 | C | 418 | G | 419 | G | 420 | cWW | tSW | |
| 44 | HL_5J7L_005 | 5J7L | 0.4089 | 1 | UNCG | AA | SSU rRNA | C | 207 | U | 208 | C | 210 | G | 211 | G | 212 | cWW | ntSW |
| 45 | HL_3V7E_002 | 3V7E | 0.4975 | 1 | Other HL | C | SAM-I riboswitch | C | 65 | U | 66 | C | 68 | G | 69 | G | 70 | cWW | |
| 46 | HL_2CZJ_007 | 2CZJ | 0.8332 | 1 | Other HL | H | tmRNA (63-MER) | G | 25 | U | 26 | C | 28 | G | 29 | C | 30 | cWW | |
| 47 | HL_6DME_002 | 6DME | 0.8255 | 1 | A | ppGpp Riboswitch | C | 57 | U | 58 | C | 60 | G | 61 | G | 62 | cWW | ||
| 48 | HL_1P6V_001 | 1P6V | 0.6761 | 1 | Other HL | B | 45-MER | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW | |
| 49 | HL_6JQ6_002 | 6JQ6 | 0.6552 | 1 | U | RNA (81-MER) | C | 45||||11_555 | U | 46||||11_555 | C | 48||||11_555 | G | 49||||11_555 | G | 50||||11_555 | cWW | ||
| 50 | HL_6JQ6_004 | 6JQ6 | 0.6552 | 1 | U | RNA (81-MER) | C | 45 | U | 46 | C | 48 | G | 49 | G | 50 | cWW | ||
| 51 | HL_2NUE_001 | 2NUE | 0.6267 | 1 | Other HL | C | 46-MER | C | 21 | G | 22 | A | 24 | A | 25 | G | 26 | cWW | ncSW |
| 52 | HL_4Y4O_111 | 4Y4O | 0.8296 | 2 | Other HL | 2A | LSU rRNA | G | 271|||I | C | 271|||J | U | 271|||L | G | 271|||M | C | 271|||O | cWW | |
| 53 | HL_5J7L_200 | 5J7L | 0.8031 | 2 | Other HL | DA | LSU rRNA | C | 2795 | U | 2796 | U | 2798 | A | 2799 | G | 2801 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 35 |
| CUACGG | 6 |
| GUUCGC | 2 |
| CGCCAG | 1 |
| AUUUGU | 1 |
| GUACGC | 1 |
| AUUCGU | 1 |
| CGCUAG | 1 |
| CCAAGG | 1 |
| CUCCGG | 1 |
| CGCAAG | 1 |
| GCUUGUC | 1 |
| CUUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 38 |
| UACG | 7 |
| GCCA | 1 |
| UUUG | 1 |
| GCUA | 1 |
| CAAG | 1 |
| UCCG | 1 |
| GCAA | 1 |
| CUUGU | 1 |
| UUUAA | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UNCG (37)
- Other HL (6)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 1.02
Coloring options: