HL_5OBM_021

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5OBM|1|1|A|913, 5OBM|1|1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0848

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5OBM|1|1|G|910
5OBM|1|1|C|911
5OBM|1|1|G|912
5OBM|1|1|A|913
5OBM|1|1|A|914
5OBM|1|1|A|915
5OBM|1|1|G|916
5OBM|1|1|A|917
5OBM|1|1|C|918

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M5

60S ribosomal protein L15-A

Chain O7

60S ribosomal protein L37-A