HL_5OBM_076

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCUUCGGAC

Length

10 nucleotides

Bulged bases

5OBM|1|2|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_076 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.381

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5OBM|1|2|G|228
5OBM|1|2|U|229
5OBM|1|2|C|230
5OBM|1|2|U|231
5OBM|1|2|U|232
5OBM|1|2|C|233
5OBM|1|2|G|234
5OBM|1|2|G|235
5OBM|1|2|A|236
5OBM|1|2|C|237

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8-A