HL_5OBM_091

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_091 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1179

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5OBM|1|2|A|900
5OBM|1|2|G|901
5OBM|1|2|G|902
5OBM|1|2|U|903
5OBM|1|2|G|904
5OBM|1|2|A|905
5OBM|1|2|A|906
5OBM|1|2|A|907
5OBM|1|2|U|908
5OBM|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-B

Chain D6

40S ribosomal protein S26-B