HL_5OBM_199
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGUACUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OBM_199 not in the Motif Atlas
- Geometric match to HL_3TUP_001
- Geometric discrepancy: 0.3666
- The information below is about HL_3TUP_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
5OBM|1|6|C|654
5OBM|1|6|G|655
5OBM|1|6|G|656
5OBM|1|6|U|657
5OBM|1|6|A|673
5OBM|1|6|C|674
5OBM|1|6|U|675
5OBM|1|6|G|676
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d1
- 40S ribosomal protein S21-A
- Chain s2
- 40S ribosomal protein S2
- Chain s9
- 40S ribosomal protein S9-A
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