HL_5ON6_052

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

5ON6|1|1|U|2501

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_052 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.1042

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ON6|1|1|A|2441
5ON6|1|1|G|2442
5ON6|1|1|A|2443
5ON6|1|1|C|2444
5ON6|1|1|A|2445
5ON6|1|1|U|2501
5ON6|1|1|A|2502
5ON6|1|1|G|2503
5ON6|1|1|U|2504
5ON6|1|1|U|2505
5ON6|1|1|U|2506

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L36-A