HL_5ON6_216

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5ON6|1|AR|G|3116, 5ON6|1|AR|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_216 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.069

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5ON6|1|AR|C|3110
5ON6|1|AR|U|3111
5ON6|1|AR|G|3112
5ON6|1|AR|A|3113
5ON6|1|AR|A|3114
5ON6|1|AR|C|3115
5ON6|1|AR|G|3116
5ON6|1|AR|C|3117
5ON6|1|AR|C|3118
5ON6|1|AR|U|3119
5ON6|1|AR|C|3120
5ON6|1|AR|U|3121
5ON6|1|AR|A|3122
5ON6|1|AR|A|3123
5ON6|1|AR|G|3124

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CQ

60S ribosomal protein L16-A

Chain DO

Ubiquitin-60S ribosomal protein L40