HL_5ONH_005

3D structure

PDB id

5ONH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAUCGGUAGAC

Length

13 nucleotides

Bulged bases

5ONH|1|E|U|16, 5ONH|1|E|C|17, 5ONH|1|E|G|18, 5ONH|1|E|G|19, 5ONH|1|E|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ONH_005 not in the Motif Atlas

Homologous match to HL_3ZGZ_001

Geometric discrepancy: 0.0652

The information below is about HL_3ZGZ_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_18470.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5ONH|1|E|G|12
5ONH|1|E|G|13
5ONH|1|E|A|14
5ONH|1|E|A|15
5ONH|1|E|U|16
5ONH|1|E|C|17
5ONH|1|E|G|18
5ONH|1|E|G|19
5ONH|1|E|U|20
5ONH|1|E|A|20|||A
5ONH|1|E|G|21
5ONH|1|E|A|22
5ONH|1|E|C|23

Current chains

Chain E

L-leucyl-tRNA(Leu)

Nearby chains

Chain D

Leucine--tRNA ligase