HL_5OOL_007

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UAAGA

Length

5 nucleotides

Bulged bases

5OOL|1|A|G|1939

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_007 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2415

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5OOL|1|A|U|1934
5OOL|1|A|A|1935
5OOL|1|A|A|1938
5OOL|1|A|G|1939
5OOL|1|A|A|1940

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial