HL_5OOL_014

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

5OOL|1|A|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_014 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2549

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5OOL|1|A|C|2175
5OOL|1|A|C|2176
5OOL|1|A|U|2177
5OOL|1|A|A|2178
5OOL|1|A|A|2179
5OOL|1|A|A|2180
5OOL|1|A|A|2181
5OOL|1|A|G|2182
5OOL|1|A|C|2183
5OOL|1|A|A|2184
5OOL|1|A|G|2185

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain t

Unknown protein or protein extension