HL_5OOL_018

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GCAAC

Length

5 nucleotides

Bulged bases

5OOL|1|A|A|2363

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3921

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5OOL|1|A|G|2349
5OOL|1|A|C|2357
5OOL|1|A|A|2358
5OOL|1|A|A|2363
5OOL|1|A|C|2364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

39S ribosomal protein L17, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial