HL_5OOL_024

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

5OOL|1|A|U|2618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_024 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2012

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5OOL|1|A|C|2612
5OOL|1|A|U|2613
5OOL|1|A|U|2614
5OOL|1|A|A|2615
5OOL|1|A|A|2616
5OOL|1|A|A|2617
5OOL|1|A|U|2618
5OOL|1|A|A|2619
5OOL|1|A|G|2620

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial