HL_5OOL_027

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

5OOL|1|A|G|2814

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_027 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1509

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5OOL|1|A|U|2812
5OOL|1|A|U|2813
5OOL|1|A|G|2814
5OOL|1|A|G|2815
5OOL|1|A|G|2816
5OOL|1|A|G|2817
5OOL|1|A|C|2818
5OOL|1|A|G|2819
5OOL|1|A|A|2820

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial