HL_5OOM_005

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUCUGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_005 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.131

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5OOM|1|A|U|1847
5OOM|1|A|U|1848
5OOM|1|A|C|1849
5OOM|1|A|U|1850
5OOM|1|A|G|1851
5OOM|1|A|A|1856

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial