5OOM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5OOM_002 | 1/A/1746:1752 | No text annotation | geometric HL_7A0S_008 HL_76371.3 | |
| HL_5OOM_004 | 1/A/1831:1839 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_5OOM_006 | 1/A/1884:1889 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_5OOM_008 | 1/A/1988:1996 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_5OOM_009 | 1/A/2035:2040 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_5OOM_012 | 1/A/2129:2136 | No text annotation | homologous HL_4WF9_028 HL_47171.2 | |
| HL_5OOM_015 | 1/A/2279:2286 | No text annotation | geometric HL_2Y9H_005 HL_44506.3 | |
| HL_5OOM_018 | 1/A/2400:2403 | Mini UNCG | geometric HL_7A0S_039 HL_90436.4 | |
| HL_5OOM_020 | 1/A/2518:2532 | No text annotation | ||
| HL_5OOM_024 | 1/A/2828:2840 | No text annotation | ||
| HL_5OOM_029 | 1/A/3176:3193 | No text annotation | geometric HL_7A0S_074 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5OOM_001 | No text annotation | ||
| HL_5OOM_003 | GNRA | ||
| HL_5OOM_005 | No text annotation | ||
| HL_5OOM_007 | Mini UNCG | ||
| HL_5OOM_010 | No text annotation | ||
| HL_5OOM_011 | GNRA | ||
| HL_5OOM_013 | No text annotation | ||
| HL_5OOM_014 | GNRA with tandem sheared | ||
| HL_5OOM_016 | UNCG | ||
| HL_5OOM_017 | No text annotation | ||
| HL_5OOM_019 | No text annotation | ||
| HL_5OOM_021 | No text annotation | ||
| HL_5OOM_022 | No text annotation | ||
| HL_5OOM_023 | No text annotation | ||
| HL_5OOM_025 | No text annotation | ||
| HL_5OOM_026 | GNRA | ||
| HL_5OOM_027 | No text annotation | ||
| HL_5OOM_028 | No text annotation | ||
| HL_5OOM_030 | No text annotation | ||
| HL_5OOM_031 | tRNA D-loop | ||
| HL_5OOM_032 | Anticodon loop related |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5OOM_003 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_5OOM_004 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_5OOM_005 | 1/A/1877:1879, 1/A/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_01003.5 | |
| IL_5OOM_006 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
| IL_5OOM_007 | 1/A/1904:1906, 1/A/2016:2018 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.5 | |
| IL_5OOM_008 | 1/A/1906:1910, 1/A/2009:2016 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5OOM_010 | 1/A/1925:1927, 1/A/1977:1979 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.5 | |
| IL_5OOM_012 | 1/A/1985:1987, 1/A/1997:2001 | Multiple bulged bases | geometric IL_7A0S_021 IL_89509.2 | |
| IL_5OOM_015 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_5OOM_016 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5OOM_037 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
| IL_5OOM_038 | 1/A/2384:2400, 1/A/2403:2408 | No text annotation | ||
| IL_5OOM_022 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
| IL_5OOM_024 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5OOM_001 | No text annotation | ||
| IL_5OOM_002 | Single bulged A | ||
| IL_5OOM_009 | Isolated non-canonical cWW pair | ||
| IL_5OOM_011 | Single bulged A | ||
| IL_5OOM_013 | No text annotation | ||
| IL_5OOM_014 | No text annotation | ||
| IL_5OOM_017 | Isolated non-canonical cWW pair | ||
| IL_5OOM_018 | No text annotation | ||
| IL_5OOM_019 | No text annotation | ||
| IL_5OOM_020 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5OOM_021 | No text annotation | ||
| IL_5OOM_036 | No text annotation | ||
| IL_5OOM_023 | Isolated tWW turn | ||
| IL_5OOM_025 | Major groove platform with extra pair | ||
| IL_5OOM_026 | No text annotation | ||
| IL_5OOM_027 | Single bulged U | ||
| IL_5OOM_028 | Minor groove platform | ||
| IL_5OOM_029 | Minor groove platform | ||
| IL_5OOM_030 | No text annotation | ||
| IL_5OOM_031 | Double sheared with non-canonical cWW | ||
| IL_5OOM_032 | Isolated non-canonical cWW pair | ||
| IL_5OOM_033 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5OOM_034 | C-loop | ||
| IL_5OOM_035 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5OOM_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
| J3_5OOM_002 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_5OOM_003 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
| J3_5OOM_004 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
| J3_5OOM_005 | 1/A/2846:2848, 1/A/2890:2900, 1/A/2909:2915 | No text annotation | ||
| J4_5OOM_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
| J4_5OOM_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
| J5_5OOM_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_5OOM_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
| J5_5OOM_003 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2846, 1/A/2915:2922 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_5OOM_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2127, 1/A/2138:2143, 1/A/2257:2266 | No text annotation | ||
| J6_5OOM_002 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2848, 1/A/2890:2900, 1/A/2909:2922 | No text annotation |
Problematic loops
No problematic loops
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