HL_5OOM_020

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

5OOM|1|A|A|2521, 5OOM|1|A|U|2522, 5OOM|1|A|C|2523, 5OOM|1|A|A|2527, 5OOM|1|A|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OOM|1|A|A|2518
5OOM|1|A|G|2519
5OOM|1|A|C|2520
5OOM|1|A|A|2521
5OOM|1|A|U|2522
5OOM|1|A|C|2523
5OOM|1|A|A|2524
5OOM|1|A|C|2525
5OOM|1|A|C|2526
5OOM|1|A|A|2527
5OOM|1|A|G|2528
5OOM|1|A|U|2529
5OOM|1|A|A|2530
5OOM|1|A|U|2531
5OOM|1|A|U|2532

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial