HL_5OOM_022

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AAACACCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_022 not in the Motif Atlas

Geometric match to HL_5E6M_002

Geometric discrepancy: 0.3436

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5OOM|1|A|A|2753
5OOM|1|A|A|2754
5OOM|1|A|A|2755
5OOM|1|A|C|2756
5OOM|1|A|A|2792
5OOM|1|A|C|2793
5OOM|1|A|C|2794
5OOM|1|A|U|2795

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial