HL_5OOM_023

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

5OOM|1|A|G|2814

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_023 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1905

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5OOM|1|A|U|2812
5OOM|1|A|U|2813
5OOM|1|A|G|2814
5OOM|1|A|G|2815
5OOM|1|A|G|2816
5OOM|1|A|G|2817
5OOM|1|A|C|2818
5OOM|1|A|G|2819
5OOM|1|A|A|2820

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial