HL_5OOM_029
3D structure
- PDB id
- 5OOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- AAUGAUAUCAUCUCAACU
- Length
- 18 nucleotides
- Bulged bases
- 5OOM|1|A|U|3183, 5OOM|1|A|C|3187, 5OOM|1|A|C|3189
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OOM_029 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.3564
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5OOM|1|A|A|3176
5OOM|1|A|A|3177
5OOM|1|A|U|3178
5OOM|1|A|G|3179
5OOM|1|A|A|3180
5OOM|1|A|U|3181
5OOM|1|A|A|3182
5OOM|1|A|U|3183
5OOM|1|A|C|3184
5OOM|1|A|A|3185
5OOM|1|A|U|3186
5OOM|1|A|C|3187
5OOM|1|A|U|3188
5OOM|1|A|C|3189
5OOM|1|A|A|3190
5OOM|1|A|A|3191
5OOM|1|A|C|3192
5OOM|1|A|U|3193
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain K
- 39S ribosomal protein L13, mitochondrial
- Chain k
- 39S ribosomal protein L53, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: