HL_5OPT_006

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUCACCG

Length

8 nucleotides

Bulged bases

5OPT|1|E|C|270

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_006 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.2294

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5OPT|1|E|C|265
5OPT|1|E|U|266
5OPT|1|E|U|267
5OPT|1|E|C|268
5OPT|1|E|A|269
5OPT|1|E|C|270
5OPT|1|E|C|271
5OPT|1|E|G|272

Current chains

Chain E

18S rRNA

Nearby chains

Chain h

RNA-binding protein, putative