HL_5OPT_011
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 5OPT|1|E|U|449, 5OPT|1|E|A|450
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OPT_011 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1389
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5OPT|1|E|C|440
5OPT|1|E|C|441
5OPT|1|E|U|442
5OPT|1|E|G|443
5OPT|1|E|A|444
5OPT|1|E|G|445
5OPT|1|E|A|446
5OPT|1|E|A|447
5OPT|1|E|A|448
5OPT|1|E|U|449
5OPT|1|E|A|450
5OPT|1|E|G|451
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain P
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
- Chain Z
- 40S ribosomal protein S8
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