HL_5OPT_016

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_016 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1059

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5OPT|1|E|C|623
5OPT|1|E|A|624
5OPT|1|E|C|625
5OPT|1|E|C|626
5OPT|1|E|C|627
5OPT|1|E|G|628

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative