HL_5OPT_024
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OPT_024 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1648
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5OPT|1|E|A|1235
5OPT|1|E|G|1236
5OPT|1|E|G|1237
5OPT|1|E|U|1238
5OPT|1|E|G|1239
5OPT|1|E|A|1240
5OPT|1|E|A|1241
5OPT|1|E|A|1242
5OPT|1|E|U|1243
5OPT|1|E|U|1244
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain O
- 40S ribosomal protein S5, putative
- Chain U
- 40S ribosomal protein S33, putative
- Chain V
- 40S ribosomal protein S14, putative
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