HL_5OPT_026

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUAGAGACC

Length

11 nucleotides

Bulged bases

5OPT|1|E|G|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_026 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2031

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5OPT|1|E|G|1332
5OPT|1|E|A|1333
5OPT|1|E|U|1334
5OPT|1|E|U|1335
5OPT|1|E|A|1336
5OPT|1|E|G|1337
5OPT|1|E|A|1338
5OPT|1|E|G|1339
5OPT|1|E|A|1340
5OPT|1|E|C|1341
5OPT|1|E|C|1342

Current chains

Chain E

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S14, putative