HL_5OPT_028

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_028 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0955

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5OPT|1|E|C|1550
5OPT|1|E|G|1551
5OPT|1|E|A|1552
5OPT|1|E|A|1553
5OPT|1|E|A|1554
5OPT|1|E|G|1555

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26

Chain d

40S ribosomal protein S2, putative

Chain e

40S ribosomal protein S15a, putative