HL_5OPT_031

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUGAGUGUUC

Length

12 nucleotides

Bulged bases

5OPT|1|E|G|1713

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_031 not in the Motif Atlas

Geometric match to HL_1P6V_002

Geometric discrepancy: 0.2716

The information below is about HL_1P6V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5OPT|1|E|G|1705
5OPT|1|E|A|1706
5OPT|1|E|U|1707
5OPT|1|E|U|1708
5OPT|1|E|G|1709
5OPT|1|E|A|1710
5OPT|1|E|G|1711
5OPT|1|E|U|1712
5OPT|1|E|G|1713
5OPT|1|E|U|1714
5OPT|1|E|U|1715
5OPT|1|E|C|1716

Current chains

Chain E

18S rRNA

Nearby chains

Chain j

Ubiquitin/ribosomal protein S27a, putative

Chain n

40S ribosomal protein S10, putative

Chain t

40S ribosomal protein S15, putative