HL_5OPT_034

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUUUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_034 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.2394

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64374.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5OPT|1|E|G|1856
5OPT|1|E|U|1857
5OPT|1|E|U|1858
5OPT|1|E|U|1859
5OPT|1|E|U|1860
5OPT|1|E|A|1861
5OPT|1|E|C|1862

Current chains

Chain E

18S rRNA

Nearby chains