Motif HL_64374.1 Version HL_64374.1 of this group appears in releases 4.2 to 4.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KR9_004 | 4KR9 | 0.8909 | 1 | X | RNA (39-MER) | G | 19 | G | 20 | A | 22 | A | 23 | C | 24 | cWW |
| 2 | HL_4XCO_003 | 4XCO | 0.5415 | 1 | M | SRP RNA | U | 162 | G | 163 | A | 165 | G | 166 | G | 167 | cWW |
| 3 | HL_2A64_001 | 2A64 | 0.0000 | 1 | A | RNase P class B | G | 31 | G | 32 | U | 34 | U | 35 | C | 36 | cWW |
| 4 | HL_6N5P_002 | 6N5P | 0.4305 | 2 | A | cyclic di-AMP riboswitch | G | 58 | U | 59 | A | 62 | G | 63 | C | 64 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 1 |
| UGUAGG | 1 |
| GGUUUC | 1 |
| GUGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 1 |
| GUAG | 1 |
| GUUU | 1 |
| UGAAG | 1 |
Release history
| Release | 4.2 |
|---|---|
| Date | 2025-10-08 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.43 | Avg 0.54 | Max 0.97
Coloring options: