HL_5OQL_003

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACCGCG

Length

7 nucleotides

Bulged bases

5OQL|1|1|C|167, 5OQL|1|1|C|168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_003 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3796

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5OQL|1|1|C|165
5OQL|1|1|A|166
5OQL|1|1|C|167
5OQL|1|1|C|168
5OQL|1|1|G|169
5OQL|1|1|C|170
5OQL|1|1|G|171

Current chains

Chain 1

35S rRNA

Nearby chains