HL_5OQL_004
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAUACC
- Length
- 7 nucleotides
- Bulged bases
- 5OQL|1|1|A|221, 5OQL|1|1|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OQL_004 not in the Motif Atlas
- Geometric match to HL_4V9F_019
- Geometric discrepancy: 0.2797
- The information below is about HL_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_42293.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5OQL|1|1|G|219
5OQL|1|1|A|220
5OQL|1|1|A|221
5OQL|1|1|U|222
5OQL|1|1|A|223
5OQL|1|1|C|224
5OQL|1|1|C|225
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain Q
- Utp30
- Chain Z
- Bms1
- Chain u
- 40S ribosomal protein S16-like protein
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