HL_5OQL_005

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUG

Length

5 nucleotides

Bulged bases

5OQL|1|1|G|265, 5OQL|1|1|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_005 not in the Motif Atlas

Geometric match to HL_6MSF_001

Geometric discrepancy: 0.1197

The information below is about HL_6MSF_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5OQL|1|1|C|264
5OQL|1|1|G|265
5OQL|1|1|C|266
5OQL|1|1|U|267
5OQL|1|1|G|268

Current chains

Chain 1

35S rRNA

Nearby chains

Chain A

Periodic tryptophan protein 2-like protein

Chain F

Utp7

Chain O

Putative U3 snoRNP protein